PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24918
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 713aa    MW: 77495.5 Da    PI: 6.6975
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24918genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07260293333
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...T CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...k 33 
                      rW+  E+e l ++v+q+G+ +Wk I  + +    
         EMT24918 260 RWSSVEEETLRKGVEQFGSSNWKDILIHNPdafI 293
                      9************************998775554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-6254297IPR009057Homeodomain-like
SuperFamilySSF466897.46E-7255298IPR009057Homeodomain-like
CDDcd116604.48E-7261290No hitNo description
SuperFamilySSF519711.53E-8378556No hitNo description
PfamPF012662.1E-12380689IPR006076FAD dependent oxidoreductase
Gene3DG3DSA:3.30.9.101.2E-8518638No hitNo description
SuperFamilySSF519711.53E-8626692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEEEDHQDGG GARLRDVEGD IVDLRAPVPH LAARVNGLRK MSDPFSPSPA FHGLTAKSLM  60
TSGTFIWDSR FLGLFYFVHH SCAWNDPTAP QGYFVPIIDG TILELTAGEE KTREILSKIE  120
DRISTPQVHK VIHDLKSSCA DLHNVVDDPL PAAKAAADKV LAARMDKAVH INDEFNNHGA  180
NCSVAGPSAV NDQGETLRKG TPSSLMDWNP TAQSLLWEDS LDPDGSRSQS HRPHLPSPRR  240
ISVSPLQVAE NKARRRRARR WSSVEEETLR KGVEQFGSSN WKDILIHNPD AFIGRTTAPL  300
GGPIPPSPER RMPSLFPVGP IPAENSAAAP PPAVLPISLN SPDLVGVRLL SPRDSQILPK  360
QLQVPLMLVQ QSPKDSRVSV DVYDENGVGG GASGVSGGLL HPYSPKAKLL WRGGEFWKES  420
MDLLRSAEKA NGTAGSDGAS RDDEALIWRR QSVFPCIYLS LSRGILRPPT TEKAADILLE  480
ALFSACQNVA NEASASSSEQ KEFNLYNEHI DNLHQFSGDY DAVIICLGGK ASSLPELTNK  540
LPLRTCRGVI AEFRLPSDTV EKYGSRSPSI LSDAWLAFQG PRTVSVGSTW QWKSDNHDPS  600
VSNEEARSAM EELLPKASAV YPGISKWDYV RARAGIRAMP PLTANGSLPL LGCLNDVIGE  660
RSNSAFWLVG GLGARGLLYH GLAGKLTAKA VISSDENMIP SEFTCWKAVK ASR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3755070.0AK375507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3096E16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM8BT030.0M8BT03_AEGTA; Uncharacterized protein
STRINGOB06G14810.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-07TRF-like 5